Samtools¶

Subcommands¶

  • Samtools flagstat
  • Samtools index
  • Samtools merge
  • Samtools mpileup
  • Samtools sort
  • Samtools stats
  • Samtools view

Table Of Contents

Available wrappers

  • Bedtools
  • Biobambam
  • Cutadapt
  • Fastqc
  • Multiqc
  • Reaper
  • Sambamba
  • Samtools
    • Subcommands
      • Samtools flagstat
      • Samtools index
      • Samtools merge
      • Samtools mpileup
      • Samtools sort
      • Samtools stats
      • Samtools view
  • Star

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